2024 Marine atlas of tara ocean unigenes

Marine atlas of tara ocean unigenes

Author: rdcc

August undefined, 2024

Web7 mei 2024 · Marine microalgae possess distinct and unique metabolic pathways, and can potentially produce specific secondary metabolites with biological activity (e.g., antipredator, allelopathic, antiproliferative, cytotoxic, anticancer, photoprotective, as well as anti-infective and antifouling activities). WebThe Tara Oceans eukaryote gene catalog. a Sampling map. Geographic distribution of 68 sampling stations at which seawater from the surface (SRF) and/or the deep chlorophyll …

Transcriptome reconstruction and functional analysis of eukaryotic ...

Web7 jul. 2024 · Searchable databases on the Web. 4. Link-only databases on the Web. 5. PubMed database. Databases in the third category are integrated for keyword seach, but the actual data are to be obtained from the original sites. Databases in the fourth category are available only in the LinkDB system. PubMed is a link-only database, but the bget page is ... WebOcean Gene Atlas v2.0 is freely ... (2024). Abstract. Testing hypothesis about the biogeography of genes using large data resources such as Tara Oceans marine … thermoprotect limited

Mechanistic insights into the key marine …

WebThe Ocean Gene Atlas v2.0: online exploration of the biogeography and phylogeny of plankton genes. C. Vernette, J. Lecubin, P. Sanchez, Tara Oceans Coordinators, S. … Web15 jun. 2024 · This study provides the first structural and mechanistic understanding of the key DMSP synthesis enzyme in marine bacteria (DsyB) and algae (DSYB) that are responsible for the annual production of ~8 billion tonnes of DMSP. DsyB is the first DMSP synthesis enzyme to be analyzed at the structural and mechanistic level. WebCurrently the Ocean Gene Atlas is deployed with (i) the Ocean Microbial Reference Gene Catalog (OM-RGC) comprising 40 million non-redundant mostly prokaryotic gene … tp6 redirect

A global ocean atlas of eukaryotic genes — the Research Portal ...

Marine atlas of tara ocean unigenes

The Ocean Gene Atlas: exploring the biogeography of plankton …

Webtive diNPF genes in the Marine Atlas of TARA Oceans Unigenes (MATOU) database [36,37,39] and the MMETSP database [38], using diNPF homologues found in public gen … WebAbstract Testing hypothesis about the biogeography of genes using large data resources such as Tara Oceans marine metagenomes and metatranscriptomes requires …

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WebBiogeographical studies have traditionally focused on readily visible organisms, but recent technological advances are enabling analyses of the large-scale distribution of …

WebOcean Gene Atlas (OGA) is a web service to explore the biogeography of marine genes based on sequence similarity with environmental genomics datasets (Fig. 1). OGA is … Web14 jul. 2024 · To assess the potential importance of osmolyte metabolic processes across the global ocean, KOs from genes associated with glycine betaine and mannitol synthesis, breakdown, and transport were searched against the surface data from the Tara Oceans dataset using the Tara Oceans Gene Atlas ( Villar et al., 2024 ).

Web10 jun. 2024 · The updated Ocean Gene Atlas presented here is unique in presenting 8 trillion of marine environmental read sequences in their environmental context, hence … WebThe Tara Oceans metagenomes (OM_RGC_v2_metaG) and metatranscriptomes (OM_RGC_v2_metaT) were searched using these pHMMs according to a published …

Webrecently identified from the Marine Atlas of Tara Oceans Unigenes (MATOUv1) database of eukaryotic genes, displays exceptional catalytic performance against its best identified …

Web22 mei 2015 · It considerably enriched our understanding of marine ecosystems and their future. The Tara Oceans expedition revealed the incredible biodiversity of a living … thermoprotector hy10lf286Web1 jul. 2024 · Currently the Ocean Gene Atlas is deployed with (i) the Ocean Microbial Reference Gene Catalog (OM-RGC) comprising 40 million non-redundant mostly … thermo protection hinodeWebGene sequences (nucleotides) were also mapped against the Marine Atlas of Tara Oceans Unigenes (MATOU) Version 1 (20241115)(36) using BLAST 2.2.28+ with the same thresholds as the ones above used for the amino acid sequences, except for the identity tp6 root_pathWebMarine mycoplankton are likely functionally analogous to their terrestrial counterparts, including performing saprotrophy and degrading high-molecular weight organic … tp6 not support: redisWebBiogeographical studies have traditionally focused on readily visible organisms, but recent technological advances are enabling analyses of the large-scale distribution of microscopic organisms, whose biogeographical patterns have long been debated. thermo protectionWebThe Ocean Gene Atlas is a web service to explore the biogeography of genes from marine planktonic organisms. It allows users to query protein or nucleotide sequences against global ocean reference gene catalogs. With just one click, the abundance and location of target sequences are visualized on world maps as well as their taxonomic distribution. thermoprotector microwaveWebWe identified ∼12,000 co-abundant gene groups (CAGs), encompassing ∼7 million unigenes, including 924 metagenomics-based transcriptomes (MGTs, CAGs larger than 500 unigenes). We demonstrated the biological validity of the MGT collection by comparing individual MGTs with available references. tp6 redis使用